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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_1161156_1185777_F

Intron Information:

Intron Rank:
150616
Intron Class:
major
Intron Phase:
Intron Coordinates:
1161156 - 1185777
Intron Length:
24622

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATGTT
5'SS Class:
major
3'SS Sequence:
TTCTATGATCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATGAT
U12 Branch Point Sequence:
CATTCTATAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
78.8
35.5
Major BPS
72.3
0.55
1.1
63.4
42.8
Major PPT
69.8
0.45
1
62.5
43.2
Minor 5ss
36.9
-1.5
3.7
57.9
46.7
Minor BPS
67.9
0.64
1.6
82.03
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030925
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026518
1152824 - 1185799
32976