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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11613854_11614286_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
11613854 - 11614286
Intron Length:
433

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCGGCG
5'SS Class:
major
3'SS Sequence:
CCATTCGGAGTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTAAATAATT
Flanking Amino Acid:
ESEYYGGEQSDDGGATPVQD
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.3
0.34
1.3
55
41.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
54.6
0.1
1
51
37.8
Minor 5ss
33.7
-1.9
3.8
47.1
48.5
Minor BPS
56
0.27
2
83.6
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011485
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011980
11597737 - 11614320
16584