About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11628707_11629397_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11628707 - 11629397
Intron Length:
691

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTTAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGCCAATCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATCAA
U12 Branch Point Sequence:
CCTTTGCCAATC
Flanking Amino Acid:
QILEANPILEAFGNAKTVRN
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
80.1
30.7
Major BPS
71.2
0.53
1
72.3
32.8
Major PPT
69.2
0.43
1
67.7
38
Minor 5ss
35
-1.7
3.2
48.2
47.9
Minor BPS
39.9
-0.7
2.3
50.03
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025399
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029147
11627189 - 11634663
7475