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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11629541_11629630_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11629541 - 11629630
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCCA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
ATTGGCCTATTC
Flanking Amino Acid:
LLEKSRVCRQAPEERNYHIF
Intron Amino Acid Position:
189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.4
38.2
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
87.9
0.85
0.7
80.1
31.9
Minor 5ss
25.6
-2.8
3
30.5
42.8
Minor BPS
42.5
-0.5
2.2
56.96
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025399
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029147
11627189 - 11634663
7475