About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11630419_11631006_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11630419 - 11631006
Intron Length:
588

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCCTAGAGA
5'SS Class:
major
3'SS Sequence:
TTTCTGAAGTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
ATTTTCTGAAGT
Flanking Amino Acid:
AWSFLRLNVKDITESQNLRT
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65
0.36
1.2
55.7
41.3
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
67.3
0.39
1.1
67.1
42.9
Minor 5ss
22.2
-3.2
3.7
31.4
42.4
Minor BPS
64.6
0.54
1.7
82.91
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025399
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029147
11627189 - 11634663
7475