About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11650767_11651607_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11650767 - 11651607
Intron Length:
841

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCATCT
5'SS Class:
major
3'SS Sequence:
ATCTGACTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TCTCCTTTACAT
Flanking Amino Acid:
TEPPSWLELQATKQKKPIVF
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.2
66
40.7
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
74.1
0.54
0.9
65.8
39.5
Minor 5ss
44.7
-0.6
3.2
66
45.1
Minor BPS
56.7
0.29
1.7
74.3
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010464
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011016
11650641 - 11669280
18640