Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11651782_11652669_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11651782 - 11652669

Intron Length:

888

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGGTGT

5'SS Class:

strong_major

3'SS Sequence:

CCCTTTCTTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGTAAAT

U12 Branch Point Sequence:

ATGCCAGTAAAT

Flanking Amino Acid:

FSLYIAVFDKVWSLGGGRDH

Intron Amino Acid Position:

101

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.2

0.95

0.8

79.5

36.8

Major BPS

58.4

0.21

1.2

38.7

Major PPT

79.8

0.67

0.7

72.5

32.3

Minor 5ss

38.5

-1.3

3.4

55.9

48.3

Minor BPS

45.3

-0.2

2.3

66.67

43.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000010464

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011016

11650641 - 11669280

18640