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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11654387_11655131_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
11654387 - 11655131
Intron Length:
745

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CAATAATACATAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TATTCAATAATA
Flanking Amino Acid:
FPEITGIHTNRAVKSFGQSC
Intron Amino Acid Position:
314

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
71.5
33.9
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
54.4
0.1
1
47.4
39
Minor 5ss
28
-2.5
3
33.3
41.7
Minor BPS
60.2
0.32
1.9
75.23
35.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010464
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011016
11650641 - 11669280
18640