Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11658253_11660172_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11658253 - 11660172

Intron Length:

1920

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACTCACC

5'SS Class:

major

3'SS Sequence:

TTTGTGTTCACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GAACCAT

U12 Branch Point Sequence:

TTTGTGTTCACA

Flanking Amino Acid:

IMKQLTENRNRYSVTKGWQL

Intron Amino Acid Position:

577

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.8

0.47

1.1

62.8

41.9

Major BPS

-0.2

1.4

52.8

42.7

Major PPT

81.5

0.71

0.9

75.8

38.1

Minor 5ss

39.6

-1.2

53.5

43.4

Minor BPS

47.8

-0.1

2.5

70.02

42.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000010464

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011016

11650641 - 11669280

18640