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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11662581_11662715_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11662581 - 11662715
Intron Length:
135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TGTTATCTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TGTAACTGAAGT
Flanking Amino Acid:
KICFPNETEETFDVGTNTKI
Intron Amino Acid Position:
665

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.8
83.3
27.9
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
79
0.65
0.9
72.7
37.3
Minor 5ss
30.7
-2.2
2.9
41.1
44.9
Minor BPS
49.3
0.03
2
71.98
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010464
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011016
11650641 - 11669280
18640