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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11665590_11666365_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11665590 - 11666365
Intron Length:
776

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTATAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTCTTATAAAC
Flanking Amino Acid:
RAISTDEWKKSIIAAYSKHE
Intron Amino Acid Position:
830

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
73.8
0.54
1
70.6
38.1
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
54.1
0.11
1.7
69.75
35

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010464
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011016
11650641 - 11669280
18640