Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11667368_11668101_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11667368 - 11668101

Intron Length:

734

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACGGTT

5'SS Class:

major

3'SS Sequence:

TTTCTCCTTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGTTAAA

U12 Branch Point Sequence:

TTCTCCTTACAG

Flanking Amino Acid:

GVSLIHQKTKEILTVYPFNK

Intron Amino Acid Position:

897

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.5

0.67

1.1

76.9

38.6

Major BPS

66.4

0.41

1.1

67.7

36.5

Major PPT

89.8

0.9

0.6

84.3

23.7

Minor 5ss

40.7

-1

3.7

64.1

47.4

Minor BPS

62.1

0.24

1.8

68.4

44.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000010464

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011016

11650641 - 11669280

18640