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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11676319_11677162_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11676319 - 11677162
Intron Length:
844

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCTGTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CTGTTCTTATTT
Flanking Amino Acid:
LAYCETHYNQLFGDVCYNCS
Intron Amino Acid Position:
339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
74.7
36.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
81.7
0.71
0.9
77.1
37.1
Minor 5ss
45.8
-0.4
3
65.7
45.4
Minor BPS
62
0.46
1.6
74.68
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016709
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043399
11675095 - 11697898
22804