Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11678220_11679056_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11678220 - 11679056

Intron Length:

837

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTATGTTTT

5'SS Class:

strong_major

3'SS Sequence:

TTTGTGTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTTAC

U12 Branch Point Sequence:

GTGTTCTTACTT

Flanking Amino Acid:

HPDHFNCTHCGKELTAEARE

Intron Amino Acid Position:

257

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.4

0.74

80.5

Major BPS

81.5

0.78

0.9

71.6

36.1

Major PPT

0.83

0.8

84.6

Minor 5ss

56.3

0.21

2.4

44.2

Minor BPS

62.8

0.48

1.6

75.75

41.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016709

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043399

11675095 - 11697898

22804