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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11689672_11690096_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11689672 - 11690096
Intron Length:
425

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAA
U12 Branch Point Sequence:
TCTGCCTGCATC
Flanking Amino Acid:
MLFAPCCGECGEFIIGRVIK
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
72.2
39.9
Major BPS
76.9
0.67
0.8
77.7
26.1
Major PPT
91.7
0.94
0.6
88.8
20.4
Minor 5ss
38.6
-1.3
3.4
52.7
46.4
Minor BPS
48.6
-0.1
2
62.53
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016709
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043399
11675095 - 11697898
22804