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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11715269_11715547_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11715269 - 11715547
Intron Length:
279

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
TCTGCTATGATT
Flanking Amino Acid:
PHNQGPGLNKGDSRGPPNHH
Intron Amino Acid Position:
944

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
85.1
25.8
Major BPS
70
0.5
1
67
39.8
Major PPT
78.2
0.63
1
76.8
32.4
Minor 5ss
35.1
-1.7
2.7
42.4
44.3
Minor BPS
51.6
0.13
1.7
71.12
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009868
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010302
11706988 - 11755630
48643