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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11715651_11720319_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11715651 - 11720319
Intron Length:
4669

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TATATGCTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TATATGCTAATA
Flanking Amino Acid:
GDGPRPPFNQDGQNPGPPPL
Intron Amino Acid Position:
910

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.8
81.4
30.7
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
64.7
0.33
1
59.3
41.4
Minor 5ss
43.3
-0.7
3.1
60.6
44.5
Minor BPS
45.4
-0.3
2.3
61.54
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009868
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010302
11706988 - 11755630
48643