Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11721367_11721694_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11721367 - 11721694

Intron Length:

328

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGTACA

5'SS Class:

strong_major

3'SS Sequence:

CTTTTTTGGACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGTTGAT

U12 Branch Point Sequence:

CTTTTTTGGACA

Flanking Amino Acid:

LQYTNPQLLEQLKIERLAQK

Intron Amino Acid Position:

561

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

97.1

1.11

0.7

89.8

22.5

Major BPS

72.4

0.56

1.1

63.1

44.4

Major PPT

77.2

0.61

75.6

38.3

Minor 5ss

-1.6

2.6

43.5

43.6

Minor BPS

59.5

0.29

1.5

69.96

36.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000009868

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010302

11706988 - 11755630

48643