About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11724206_11724726_R


Intron Information:

Intron Rank:
9

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
11724206 - 11724726

Intron Length:
521

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
TGG|GTACGTGGC

5'SS Class:
major

3'SS Sequence:
TTTGATGCATCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTTTGAT

U12 Branch Point Sequence:
TGTGTCATGATT

Flanking Amino Acid:
SDGSLLFWHVGVEKEVGGME

Intron Amino Acid Position:
362

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
74.9
0.59
1.1
62.9
42.9

Major BPS
96.4
1.15
0.6
85.7
34.9

Major PPT
69.3
0.43
1
67.3
43.4

Minor 5ss
31.5
-2.1
3.3
34.9
41.5

Minor BPS
51.4
0.12
1.7
72
39.3

Associated Gene:

Gene:

Ensembl Gene ID:

Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

11706988 - 11755630
48643