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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11725095_11726126_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11725095 - 11726126
Intron Length:
1032

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTTCA
5'SS Class:
major
3'SS Sequence:
TCTGTGCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTGTAC
U12 Branch Point Sequence:
GGTTTCTGTACA
Flanking Amino Acid:
DPKTGQSLATLHAHKNTVME
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.1
71
35.3
Major BPS
49.6
-0
1.4
51.3
43.9
Major PPT
79.6
0.67
0.9
72.9
37.4
Minor 5ss
43.4
-0.7
2.8
60.6
43.7
Minor BPS
52.5
0.07
1.8
65.58
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009868
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010302
11706988 - 11755630
48643