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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11752220_11752700_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11752220 - 11752700
Intron Length:
481

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTCA
5'SS Class:
strong_major
3'SS Sequence:
TCTGAATTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TGTTTCTGAATT
Flanking Amino Acid:
LTFNFETILQAHDSPVRAMT
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
80.1
28.4
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
76.7
0.6
0.9
69
40.8
Minor 5ss
39.8
-1.1
2.8
50.7
45.7
Minor BPS
72.5
0.78
1.3
85.39
34.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009868
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010302
11706988 - 11755630
48643