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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11752797_11753475_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11752797 - 11753475
Intron Length:
679

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
ATACAGTTAAAT
Flanking Amino Acid:
KVKCPVFVVRWTPEGRRLVT
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
83.2
30.8
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
95.4
1.02
0.5
91.9
18.9
Minor 5ss
33.4
-1.9
2.8
34
41.5
Minor BPS
46.5
-0.1
2.2
67.67
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009868
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010302
11706988 - 11755630
48643