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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11753581_11754020_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11753581 - 11754020
Intron Length:
440

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CACTTCTAAATC
Flanking Amino Acid:
IQPDAGYYNDLVPPIGMLNN
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1.2
83.2
30.8
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
87.5
0.84
0.6
84.2
23.8
Minor 5ss
36.4
-1.5
2.7
41.6
38.3
Minor BPS
52.8
0.07
1.7
58.13
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009868
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010302
11706988 - 11755630
48643