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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11754090_11755426_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11754090 - 11755426
Intron Length:
1337

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTGGTTAA
5'SS Class:
major
3'SS Sequence:
TTTTTCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATGAA
U12 Branch Point Sequence:
GTGATATGAACT
Flanking Amino Acid:
YNPSVIKYLENRVWQRDQRD
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1.2
72.3
35.4
Major BPS
66.7
0.41
1
57.8
39
Major PPT
95.4
1.02
0.6
88.7
28.3
Minor 5ss
34.5
-1.8
2.9
40.7
45.6
Minor BPS
49
0.01
1.8
67.64
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009868
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010302
11706988 - 11755630
48643