Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11773916_11774850_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11773916 - 11774850

Intron Length:

935

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTGAGCATT

5'SS Class:

strong_major

3'SS Sequence:

TTTTATCTTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

AACCCTTTAATA

Flanking Amino Acid:

TAEEAKALIPSLEGRFEDEE

Intron Amino Acid Position:

117

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.9

0.92

0.8

86.9

30.1

Major BPS

96.5

1.15

0.6

34.2

Major PPT

90.2

0.9

0.7

85.2

29.1

Minor 5ss

39.9

-1.1

3.1

56.9

47.4

Minor BPS

64.1

0.44

1.2

64.21

36.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000009812

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033656

11773220 - 11775821

2602

ENSAPLT00000010220

11773220 - 11776509

3290