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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11774947_11775429_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11774947 - 11775429
Intron Length:
483

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TCTTCCTTTACA
Flanking Amino Acid:
KNRETIASVRSLLLQKKLHK
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.5
32.8
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
89.1
0.88
0.6
83.6
24.8
Minor 5ss
26.6
-2.7
3
31.8
42.6
Minor BPS
77.4
0.86
1.5
83.52
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009812
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033656
11773220 - 11775821
2602
ENSAPLT00000010220
11773220 - 11776509
3290