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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11785358_11786343_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11785358 - 11786343
Intron Length:
986

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTCAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATTTTTCAATA
Flanking Amino Acid:
TYLPEVAKEQDWDQIQTIDS
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
74.8
38.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
77.2
0.61
0.9
74.6
34.7
Minor 5ss
37
-1.5
3.2
48.2
47.9
Minor BPS
63.7
0.43
1.4
72.11
34

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009785
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010193
11784034 - 11794532
10499