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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11787856_11793180_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11787856 - 11793180
Intron Length:
5325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTGAGTAAA
5'SS Class:
major
3'SS Sequence:
TTTGCCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGAGAC
U12 Branch Point Sequence:
ACTACAGCATTT
Flanking Amino Acid:
PRLPRFTNDPYPLFVTWKTG
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
0.9
74.8
29.6
Major BPS
48.5
-0
1.2
44.4
38.7
Major PPT
87.4
0.84
0.7
84.9
29.9
Minor 5ss
31.5
-2.1
2.7
34.9
36
Minor BPS
35.7
-1
2.3
52.38
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009785
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010193
11784034 - 11794532
10499