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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11800808_11802050_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11800808 - 11802050
Intron Length:
1243

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTTGC
5'SS Class:
major
3'SS Sequence:
TCTTTCTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
GATAGCTTGACT
Flanking Amino Acid:
EPMDIMRPVSAVPPLSTSTV
Intron Amino Acid Position:
636

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
65.8
41
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
88.9
0.87
0.6
88
21.8
Minor 5ss
39.3
-1.2
3.1
49.2
42.4
Minor BPS
57.7
0.32
1.9
73.96
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009195
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044508
11799711 - 11813673
13963
ENSAPLT00000018276
11799711 - 11814789
15079
ENSAPLT00000009650
11799711 - 11814789
15079