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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11802413_11803161_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11802413 - 11803161
Intron Length:
749

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGACTT
5'SS Class:
strong_major
3'SS Sequence:
TCCAATTTCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCAAT
U12 Branch Point Sequence:
ATTAACTTCACT
Flanking Amino Acid:
RSTSGSPRPAGAKPKPEIHV
Intron Amino Acid Position:
515

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
75.5
40.6
Major BPS
71.8
0.54
1.2
79
32.5
Major PPT
73.9
0.54
0.9
67.4
37.5
Minor 5ss
37.5
-1.4
3.3
49.3
46.4
Minor BPS
58.3
0.34
2
80.49
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009195
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044508
11799711 - 11813673
13963
ENSAPLT00000018276
11799711 - 11814789
15079
ENSAPLT00000009650
11799711 - 11814789
15079