Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11805912_11806038_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11805912 - 11806038

Intron Length:

127

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTGGCAAA

5'SS Class:

major

3'SS Sequence:

TTGCTGCTTGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GAGTGAT

U12 Branch Point Sequence:

CGTGCTAGGAGT

Flanking Amino Acid:

PLSNSLLLQAVSAQAPNSAI

Intron Amino Acid Position:

338

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.8

0.44

1.2

66.2

41.1

Major BPS

55.7

0.14

1.4

49.1

46.3

Major PPT

79.4

0.66

0.9

73.2

37.2

Minor 5ss

33.7

-1.9

39.8

45.9

Minor BPS

39.2

-0.7

1.9

52.89

42.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000009195

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018276

11799711 - 11814789

15079