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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11806084_11810539_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11806084 - 11810539
Intron Length:
4456

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTCTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TAATTTTGAATT
Flanking Amino Acid:
SSVSTIRQYPDNLTCPLSNS
Intron Amino Acid Position:
323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.2
35.1
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
76.9
0.61
1
73.7
36.3
Minor 5ss
29.8
-2.3
3.3
38.8
46.3
Minor BPS
62.2
0.46
1.3
74.42
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009195
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018276
11799711 - 11814789
15079