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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11812989_11813548_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11812989 - 11813548
Intron Length:
560

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGATG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
ATCTTCATGATT
Flanking Amino Acid:
TAAHATESTLSRPTLSIQQH
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
75.8
39.8
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
89.4
0.89
0.6
84.8
22.8
Minor 5ss
35.2
-1.7
3.3
47.8
47.9
Minor BPS
56.5
0.29
1.6
73.44
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009195
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018276
11799711 - 11814789
15079
ENSAPLT00000009650
11799711 - 11814789
15079