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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11827840_11829620_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11827840 - 11829620
Intron Length:
1781

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAATTCT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTGTTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TCTGTGTTTATA
Flanking Amino Acid:
YKAKDDTQVKGTDVNATVID
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.9
28.5
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
78
0.63
0.9
72.1
38
Minor 5ss
36.7
-1.5
3
50.4
46
Minor BPS
44.2
-0.4
2.3
57.54
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007044
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028350
11825512 - 11862345
36834
ENSAPLT00000007476
11824984 - 11862345
37362