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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11829700_11829827_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11829700 - 11829827
Intron Length:
128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGACTC
5'SS Class:
strong_major
3'SS Sequence:
TATTCCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTTAT
U12 Branch Point Sequence:
TTACCCTTATTC
Flanking Amino Acid:
EVQGFLFGKLRQLYPDLTEE
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
79
35.3
Major BPS
66.5
0.41
1.1
57.2
40.1
Major PPT
83.5
0.75
0.7
81.8
29.7
Minor 5ss
36.5
-1.5
3.2
50.8
45.8
Minor BPS
65
0.45
1.6
72.94
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007044
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007476
11824984 - 11862345
37362
ENSAPLT00000028350
11825512 - 11862345
36834