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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11832020_11834957_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11832020 - 11834957
Intron Length:
2938

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGCTT
5'SS Class:
strong_major
3'SS Sequence:
TACTTTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTCTTTCTACTT
Flanking Amino Acid:
LRAEIEENQKYFKGTLGLQP
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
75.3
40.4
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
86.9
0.83
0.7
84.8
29.6
Minor 5ss
36.8
-1.5
3.5
56.4
47.8
Minor BPS
49
0
1.9
71.16
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007044
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028350
11825512 - 11862345
36834