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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11835050_11835719_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11835050 - 11835719
Intron Length:
670

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGAATG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATT
Flanking Amino Acid:
LIDLDTQDIFSLIDVLRNEA
Intron Amino Acid Position:
289

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1
75.5
40.6
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
86.7
0.83
0.7
78.2
35.6
Minor 5ss
35.7
-1.6
3.3
48
47.7
Minor BPS
84.9
1.17
0.8
94.97
24.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007044
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007476
11824984 - 11862345
37362
ENSAPLT00000028350
11825512 - 11862345
36834