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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11841429_11843320_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11841429 - 11843320
Intron Length:
1892

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACATCT
5'SS Class:
major
3'SS Sequence:
TTTTTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
TCCCCCTGCACC
Flanking Amino Acid:
ANSMTYLTKKDDSFVRPVTF
Intron Amino Acid Position:
592

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1.1
75.1
35.8
Major BPS
77.3
0.68
1
81.5
27
Major PPT
96
1.03
0.5
92.7
17.1
Minor 5ss
46.1
-0.4
2.9
66.5
44.4
Minor BPS
49
-0
2
60.44
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007044
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028350
11825512 - 11862345
36834