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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11842796_11843320_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11842796 - 11843320
Intron Length:
525

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAAACAT
5'SS Class:
major
3'SS Sequence:
TTTTTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
TCCCCCTGCACC
Flanking Amino Acid:
KKGMSSKEIYDDSFVRPVTF
Intron Amino Acid Position:
634

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
66.7
38.5
Major BPS
77.3
0.68
1
81.5
27
Major PPT
96
1.03
0.5
92.7
17.1
Minor 5ss
33.1
-1.9
3.3
44.6
44.3
Minor BPS
49
-0
2
60.44
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007044
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007476
11824984 - 11862345
37362