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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11848697_11849013_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11848697 - 11849013
Intron Length:
317

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAGGAT
5'SS Class:
major
3'SS Sequence:
TTTTTCTGTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATAGCTTAACA
Flanking Amino Acid:
IEYHFFEERYSAVKLRPKEG
Intron Amino Acid Position:
854

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
68.1
36.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
84.9
0.78
0.8
85.4
29.4
Minor 5ss
36.3
-1.5
3.7
54.5
49.7
Minor BPS
67.7
0.55
1.8
77.62
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007044
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028350
11825512 - 11862345
36834
ENSAPLT00000007476
11824984 - 11862345
37362