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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_1185913_1189232_F

Intron Information:

Intron Rank:
150614
Intron Class:
major
Intron Phase:
Intron Coordinates:
1185913 - 1189232
Intron Length:
3320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
ATCTATTCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCACTTTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.8
79.3
28.9
Major BPS
100
1.24
0.5
100
0
Major PPT
79.7
0.67
0.9
73.7
36
Minor 5ss
30.7
-2.2
2.6
33.5
35.6
Minor BPS
71.9
0.67
1.2
74.57
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030925
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023396
1185681 - 1190084
4404