Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11861763_11862099_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11861763 - 11862099

Intron Length:

337

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTA|GTAAGTACA

5'SS Class:

major

3'SS Sequence:

GTTTTGTTTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATGCAT

U12 Branch Point Sequence:

AGTGTTTGAACA

Flanking Amino Acid:

SKKRAKTIDLCNNPMTKEPK

Intron Amino Acid Position:

1366

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.68

76.2

32.6

Major BPS

67.2

0.43

1.4

77.7

37.1

Major PPT

86.2

0.81

0.8

80.6

Minor 5ss

37.9

-1.4

2.7

45.5

37.1

Minor BPS

53.6

0.11

1.5

62.74

37.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000007044

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028350

11825512 - 11862345

36834

ENSAPLT00000007476

11824984 - 11862345

37362