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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_11895706_12071302_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11895706 - 12071302
Intron Length:
175597

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGGGC
5'SS Class:
major
3'SS Sequence:
CTTCTTCTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTAATTTTATTT
Flanking Amino Acid:
RRESAAAKTPRKFYYITLLR
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.7
0.35
1.3
56.6
42.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
84.9
0.79
0.7
80.9
24.3
Minor 5ss
34
-1.8
3.8
50.3
46.3
Minor BPS
55.9
0.26
1.6
72.7
38.8

Associated Gene:

Gene:
HS6ST1
Ensembl Gene ID:
ENSAPLG00000007002
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007255
11894997 - 12071820
176824