About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_1194387_1195642_R

Intron Information:

Intron Rank:
147439
Intron Class:
major
Intron Phase:
Intron Coordinates:
1194387 - 1195642
Intron Length:
1256

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAA
U12 Branch Point Sequence:
TAAGAGTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
78.5
0.71
0.9
69.7
37.1
Major PPT
88.2
0.86
0.8
80.5
37
Minor 5ss
35.2
-1.7
3
49.5
46.3
Minor BPS
41.3
-0.5
2.3
58.7
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026654
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028686
1189787 - 1195818
6032