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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_1204139_1204277_F

Intron Information:

Intron Rank:
133837
Intron Class:
major
Intron Phase:
Intron Coordinates:
1204139 - 1204277
Intron Length:
139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
TCCCTTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
ATTTACTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
70.3
40.5
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
82.9
0.74
0.7
78.4
27.3
Minor 5ss
38.3
-1.3
2.8
51.5
39
Minor BPS
65.2
0.55
1.8
83.5
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021964
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031507
1203768 - 1217383
13616