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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_1204306_1216906_F

Intron Information:

Intron Rank:
133838
Intron Class:
major
Intron Phase:
Intron Coordinates:
1204306 - 1216906
Intron Length:
12601

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
GTATTCTTCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
AATTTTTGCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.6
33.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
79.4
0.66
0.9
77.2
36.8
Minor 5ss
39.2
-1.2
2.8
51.8
39
Minor BPS
47.8
-0
1.8
67.59
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021964
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031507
1203768 - 1217383
13616