Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_12357339_12386999_F

Intron Information:

Intron Rank:

146526

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

12357339 - 12386999

Intron Length:

29661

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGGATAA

5'SS Class:

strong_major

3'SS Sequence:

AAACTGTCACTAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TAATCAT

U12 Branch Point Sequence:

TCATCTTTAAAC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.2

0.76

73.9

32.9

Major BPS

80.4

0.76

80.3

31.8

Major PPT

53.7

0.08

45.2

41.4

Minor 5ss

35.9

-1.6

3.3

46.4

48.9

Minor BPS

70.1

0.61

1.4

72.33

38.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028950

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038536

12357281 - 12387121

29841