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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_12387102_12414241_F

Intron Information:

Intron Rank:
146527
Intron Class:
major
Intron Phase:
Intron Coordinates:
12387102 - 12414241
Intron Length:
27140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAGT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTATCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
ACTTTGTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
77.9
36.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
76.8
0.6
0.9
70
40.6
Minor 5ss
34.5
-1.8
3.1
49.5
46.3
Minor BPS
49.9
0.07
2.3
73.32
44

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028950
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039216
12386501 - 12467876
81376