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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_12387102_12456654_F

Intron Information:

Intron Rank:
146531
Intron Class:
major
Intron Phase:
Intron Coordinates:
12387102 - 12456654
Intron Length:
69553

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TTTTTGTTACTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
77.9
36.7
Major BPS
79
0.72
1
69
38.9
Major PPT
79.5
0.66
0.9
74.6
40
Minor 5ss
34.5
-1.8
3.1
49.5
46.3
Minor BPS
53.6
0.11
2.3
74.1
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028950
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045627
12386703 - 12474499
87797