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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_12387102_12495571_F

Intron Information:

Intron Rank:
146525
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
12387102 - 12495571
Intron Length:
108470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAGT
5'SS Class:
strong_major
3'SS Sequence:
GACCTCCAAGGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
ACTGCTTGACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
77.9
36.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
44.4
-0.3
1.7
44.4
36.3
Minor 5ss
34.5
-1.8
3.1
49.5
46.3
Minor BPS
48.7
-0
1.8
66.49
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028950
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037420
12386703 - 12495635
108933